Sainfoin (Onobrychis spp.) crop ontology: supporting germplasm characterization and international research collaborations

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dc.authoridHershberger, Jenna/0000-0002-3147-6867
dc.authoridMeyering, Bryce/0000-0002-1524-787X
dc.authoridCassetta, Eric/0000-0003-2902-1473
dc.contributor.authorKarabulut, Ebrar
dc.contributor.authorErkoc, Kubra
dc.contributor.authorAci, Murat
dc.contributor.authorAydin, Mahmut
dc.contributor.authorBarriball, Spencer
dc.contributor.authorBraley, Jackson
dc.contributor.authorCassetta, Eric
dc.date.accessioned2025-01-06T17:44:18Z
dc.date.available2025-01-06T17:44:18Z
dc.date.issued2023
dc.description.abstractSainfoin (Onobrychis spp.) is a perennial forage legume that is also attracting attention as a perennial pulse with potential for human consumption. The dual use of sainfoin underpins diverse research and breeding programs focused on improving sainfoin lines for forage and pulses, which is driving the generation of complex datasets describing high dimensional phenotypes in the post-omics era. To ensure that multiple user groups, for example, breeders selecting for forage and those selecting for edible seed, can utilize these rich datasets, it is necessary to develop common ontologies and accessible ontology platforms. One such platform, Crop Ontology, was created in 2008 by the Consortium of International Agricultural Research Centers (CGIAR) to host crop-specific trait ontologies that support standardized plant breeding databases. In the present study, we describe the sainfoin crop ontology (CO). An in-depth literature review was performed to develop a comprehensive list of traits measured and reported in sainfoin. Because the same traits can be measured in different ways, ultimately, a set of 98 variables (variable = plant trait + method of measurement + scale of measurement) used to describe variation in sainfoin were identified. Variables were formatted and standardized based on guidelines provided here for inclusion in the sainfoin CO. The 98 variables contained a total of 82 traits from four trait classes of which 24 were agronomic, 31 were morphological, 19 were seed and forage quality related, and 8 were phenological. In addition to the developed variables, we have provided a roadmap for developing and submission of new traits to the sainfoin CO.
dc.description.sponsorshipScientific and Technological Research Council of Turkey (TUBITAK) Research Grant [120C136]; Foundation for Food & Agriculture Research Seeding Solutions Grant; Perennial Agriculture Project
dc.description.sponsorshipThe Scientific and Technological Research Council of Turkey (TUBITAK) Research Grant (number 120C136); The Foundation for Food & Agriculture Research Seeding Solutions Grant, The Perennial Agriculture Project, a joint venture between the Malone Family Foundation and The Land Institute; Clemson University Startup.
dc.identifier.doi10.3389/fpls.2023.1177406
dc.identifier.issn1664-462X
dc.identifier.pmid37255566
dc.identifier.scopus2-s2.0-85161078464
dc.identifier.scopusqualityQ1
dc.identifier.urihttps://doi.org/10.3389/fpls.2023.1177406
dc.identifier.urihttps://hdl.handle.net/20.500.14669/2985
dc.identifier.volume14
dc.identifier.wosWOS:000995907400001
dc.identifier.wosqualityQ1
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherFrontiers Media Sa
dc.relation.ispartofFrontiers in Plant Science
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/openAccess
dc.snmzKA_20241211
dc.subjectsainfoin
dc.subjectOnobrychis spp
dc.subjectcrop ontology
dc.subjectperennial grain
dc.subjectpulse
dc.subjectforage
dc.titleSainfoin (Onobrychis spp.) crop ontology: supporting germplasm characterization and international research collaborations
dc.typeArticle

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